Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01779.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1797
ACGTcount: A:0.26, C:0.19, G:0.20, T:0.35


Found at i:801 original size:53 final size:53

Alignment explanation


    Indices: 721--831  Score: 215
    Period size: 53  Copynumber: 2.1  Consensus size: 53

        711 AAGTTATCTT

                                                                 
        721 GATACTGTCCTTTTCTATTTTACTTCTCTTGGGGTAGTCCTTTCACTTTTTTA
          1 GATACTGTCCTTTTCTATTTTACTTCTCTTGGGGTAGTCCTTTCACTTTTTTA

                                                                 
        774 GATACTGTCCTTTTCTATTTTACTTCTCTTGGGGTAGTCCTTTCACTTTTTTA
          1 GATACTGTCCTTTTCTATTTTACTTCTCTTGGGGTAGTCCTTTCACTTTTTTA

                  
        827 G-TACT
          1 GATACT

        832 TGATATTGCA


Statistics
Matches: 58,  Mismatches: 0, Indels: 1
        0.98            0.00        0.02

Matches are distributed among these distances:
  52    4  0.07
  53   54  0.93

ACGTcount: A:0.14, C:0.21, G:0.14, T:0.52


Consensus pattern (53 bp):   
GATACTGTCCTTTTCTATTTTACTTCTCTTGGGGTAGTCCTTTCACTTTTTTA
Done.