Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01811.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3890
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.34


Found at i:2211 original size:31 final size:31

Alignment explanation


    Indices: 2175--2233  Score: 84
    Period size: 31  Copynumber: 1.9  Consensus size: 31

       2165 TTAATCACTA

                        *                   
       2175 AATTATTCAAAAGTTT-TCATTTAAGTCATTG
          1 AATTATTCAAAAATTTCT-ATTTAAGTCATTG

                   *                    
       2206 AATTATTTAAAAATTTCTATTTAAGTCA
          1 AATTATTCAAAAATTTCTATTTAAGTCA

       2234 CTTGGATGTA


Statistics
Matches: 25,  Mismatches: 2, Indels: 2
        0.86            0.07        0.07

Matches are distributed among these distances:
  31   24  0.96
  32    1  0.04

ACGTcount: A:0.39, C:0.08, G:0.07, T:0.46


Consensus pattern (31 bp):   
AATTATTCAAAAATTTCTATTTAAGTCATTG

Found at i:2937 original size:6 final size:6

Alignment explanation


    Indices: 2928--2957  Score: 60
    Period size: 6  Copynumber: 5.0  Consensus size: 6

       2918 CTAAAAGGAA

                                              
       2928 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
          1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT

       2958 GGACATAGCA


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   24  1.00

ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17


Consensus pattern (6 bp):   
AAAAAT

Done.