Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01816.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 900

Length: 1500
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28


Found at i:497 original size:21 final size:21

Alignment explanation


    Indices: 471--511  Score: 73
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        461 CACCATCATC

                                 
        471 ATCAATATCAGCAGCAGCAGT
          1 ATCAATATCAGCAGCAGCAGT

                      *         
        492 ATCAATATCATCAGCAGCAG
          1 ATCAATATCAGCAGCAGCAG

        512 CAGCAACAGC


Statistics
Matches: 19,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   19  1.00

ACGTcount: A:0.39, C:0.24, G:0.17, T:0.20


Consensus pattern (21 bp):   
ATCAATATCAGCAGCAGCAGT
Done.