Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01822.F12

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3701
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.31


Found at i:2291 original size:27 final size:27

Alignment explanation


    Indices: 2253--2307  Score: 110
    Period size: 27  Copynumber: 2.0  Consensus size: 27

       2243 TTAGAACCTT

                                       
       2253 AGTAGAATGTGACACAGGCTCCATATA
          1 AGTAGAATGTGACACAGGCTCCATATA

                                       
       2280 AGTAGAATGTGACACAGGCTCCATATA
          1 AGTAGAATGTGACACAGGCTCCATATA

             
       2307 A
          1 A

       2308 CAAAATTGTG


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  27   28  1.00

ACGTcount: A:0.38, C:0.18, G:0.22, T:0.22


Consensus pattern (27 bp):   
AGTAGAATGTGACACAGGCTCCATATA

Found at i:2317 original size:27 final size:27

Alignment explanation


    Indices: 2258--2313  Score: 87
    Period size: 27  Copynumber: 2.1  Consensus size: 27

       2248 ACCTTAGTAG

                                    * *
       2258 AATGTGACACAGGCTCCATATAAGTAG
          1 AATGTGACACAGGCTCCATATAAGCAA

                                       
       2285 AATGTGACACAGGCTCCATATAA-CAA
          1 AATGTGACACAGGCTCCATATAAGCAA

               
       2311 AAT
          1 AAT

       2314 TGTGCTGTTG


Statistics
Matches: 27,  Mismatches: 2, Indels: 1
        0.90            0.07        0.03

Matches are distributed among these distances:
  26    4  0.15
  27   23  0.85

ACGTcount: A:0.41, C:0.20, G:0.18, T:0.21


Consensus pattern (27 bp):   
AATGTGACACAGGCTCCATATAAGCAA
Done.