Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g02267.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3079
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30


Found at i:2186 original size:14 final size:14

Alignment explanation


    Indices: 2167--2196  Score: 51
    Period size: 14  Copynumber: 2.1  Consensus size: 14

       2157 CAGAAGTGCC

                          
       2167 CTTTTTTTTTTCTT
          1 CTTTTTTTTTTCTT

                       *  
       2181 CTTTTTTTTTTTTT
          1 CTTTTTTTTTTCTT

              
       2195 CT
          1 CT

       2197 CTAGGAAGGC


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  14   15  1.00

ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87


Consensus pattern (14 bp):   
CTTTTTTTTTTCTT
Done.