Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01825.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3172
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31


Found at i:2429 original size:40 final size:40

Alignment explanation


    Indices: 2371--2452  Score: 137
    Period size: 40  Copynumber: 2.0  Consensus size: 40

       2361 GAGAGAAAGA

                                                    
       2371 AAACAAGCGATGGAAGTTGCCGTTTGAACCATGACATGAG
          1 AAACAAGCGATGGAAGTTGCCGTTTGAACCATGACATGAG

                   *     *               *          
       2411 AAACAAGGGATGGTAGTTGCCGTTTGAACTATGACATGAG
          1 AAACAAGCGATGGAAGTTGCCGTTTGAACCATGACATGAG

              
       2451 AA
          1 AA

       2453 TACGTATTCA


Statistics
Matches: 39,  Mismatches: 3, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  40   39  1.00

ACGTcount: A:0.35, C:0.15, G:0.28, T:0.22


Consensus pattern (40 bp):   
AAACAAGCGATGGAAGTTGCCGTTTGAACCATGACATGAG
Done.