Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01828.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 624

Length: 1040
ACGTcount: A:0.30, C:0.14, G:0.19, T:0.37


Found at i:344 original size:20 final size:20

Alignment explanation


    Indices: 319--370  Score: 104
    Period size: 20  Copynumber: 2.6  Consensus size: 20

        309 ACATCTATTA

                                
        319 AATGTGTCTTAAGCATGTTT
          1 AATGTGTCTTAAGCATGTTT

                                
        339 AATGTGTCTTAAGCATGTTT
          1 AATGTGTCTTAAGCATGTTT

                        
        359 AATGTGTCTTAA
          1 AATGTGTCTTAA

        371 AAGTGTGTTA


Statistics
Matches: 32,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   32  1.00

ACGTcount: A:0.27, C:0.10, G:0.19, T:0.44


Consensus pattern (20 bp):   
AATGTGTCTTAAGCATGTTT
Done.