Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01830.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1847
ACGTcount: A:0.32, C:0.15, G:0.20, T:0.33


Found at i:281 original size:18 final size:19

Alignment explanation


    Indices: 253--288  Score: 56
    Period size: 18  Copynumber: 1.9  Consensus size: 19

        243 AAATTCACGG

                        *      
        253 AATTATTTTTTAGTTGATC
          1 AATTATTTTTTAATTGATC

                              
        272 AATT-TTTTTTAATTGAT
          1 AATTATTTTTTAATTGAT

        289 AGGATGAGTA


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  18   12  0.75
  19    4  0.25

ACGTcount: A:0.28, C:0.03, G:0.08, T:0.61


Consensus pattern (19 bp):   
AATTATTTTTTAATTGATC
Done.