Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01864.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 535

Length: 893
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.37


Found at i:109 original size:3 final size:3

Alignment explanation


    Indices: 101--168  Score: 111
    Period size: 3  Copynumber: 22.7  Consensus size: 3

         91 TTTCTCTCTG

                         *                                                 
        101 TCT TCT TCT TAT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
          1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT

                                       
        149 TCT TCT T-T TCCT TCT TCT TC
          1 TCT TCT TCT T-CT TCT TCT TC

        169 CTCTCCTCCT


Statistics
Matches: 61,  Mismatches: 2, Indels: 4
        0.91            0.03        0.06

Matches are distributed among these distances:
   2    2  0.03
   3   57  0.93
   4    2  0.03

ACGTcount: A:0.01, C:0.32, G:0.00, T:0.66


Consensus pattern (3 bp):   
TCT

Done.