Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01893.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 771

Length: 1285
ACGTcount: A:0.39, C:0.13, G:0.14, T:0.34


Found at i:680 original size:7 final size:7

Alignment explanation


    Indices: 668--693  Score: 52
    Period size: 7  Copynumber: 3.7  Consensus size: 7

        658 ACGAGGATTG

                   
        668 AAATAGT
          1 AAATAGT

                   
        675 AAATAGT
          1 AAATAGT

                   
        682 AAATAGT
          1 AAATAGT

                 
        689 AAATA
          1 AAATA

        694 TTATTAAAAT


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   19  1.00

ACGTcount: A:0.62, C:0.00, G:0.12, T:0.27


Consensus pattern (7 bp):   
AAATAGT
Done.