Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01908.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 354

Length: 591
ACGTcount: A:0.25, C:0.20, G:0.16, T:0.38


Found at i:466 original size:13 final size:12

Alignment explanation


    Indices: 448--477  Score: 51
    Period size: 12  Copynumber: 2.4  Consensus size: 12

        438 GTGTTTAATG

                         
        448 ATTTTTATTATGA
          1 ATTTTTA-TATGA

                        
        461 ATTTTTATATGA
          1 ATTTTTATATGA

                 
        473 ATTTT
          1 ATTTT

        478 CTGGTGTTTT


Statistics
Matches: 17,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  12   10  0.59
  13    7  0.41

ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63


Consensus pattern (12 bp):   
ATTTTTATATGA
Done.