Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01909.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3973
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34


Found at i:3877 original size:37 final size:37

Alignment explanation


    Indices: 3835--3911  Score: 154
    Period size: 37  Copynumber: 2.1  Consensus size: 37

       3825 TATTAGAGTA

                                                 
       3835 AGTACAGGGATTCATTTATATTACTTAAAATTTAAGT
          1 AGTACAGGGATTCATTTATATTACTTAAAATTTAAGT

                                                 
       3872 AGTACAGGGATTCATTTATATTACTTAAAATTTAAGT
          1 AGTACAGGGATTCATTTATATTACTTAAAATTTAAGT

               
       3909 AGT
          1 AGT

       3912 CTTTTTAATA


Statistics
Matches: 40,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  37   40  1.00

ACGTcount: A:0.38, C:0.08, G:0.14, T:0.40


Consensus pattern (37 bp):   
AGTACAGGGATTCATTTATATTACTTAAAATTTAAGT
Done.