Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01909.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1739
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.29


Found at i:1624 original size:37 final size:37

Alignment explanation


    Indices: 1582--1658  Score: 154
    Period size: 37  Copynumber: 2.1  Consensus size: 37

       1572 TATTAGAGTA

                                                 
       1582 AGTACAGGGATTCATTTATATTACTTAAAATTTAAGT
          1 AGTACAGGGATTCATTTATATTACTTAAAATTTAAGT

                                                 
       1619 AGTACAGGGATTCATTTATATTACTTAAAATTTAAGT
          1 AGTACAGGGATTCATTTATATTACTTAAAATTTAAGT

               
       1656 AGT
          1 AGT

       1659 CTTTTTAATA


Statistics
Matches: 40,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  37   40  1.00

ACGTcount: A:0.38, C:0.08, G:0.14, T:0.40


Consensus pattern (37 bp):   
AGTACAGGGATTCATTTATATTACTTAAAATTTAAGT
Done.