Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01914.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 791

Length: 1319
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32


Found at i:1065 original size:15 final size:17

Alignment explanation


    Indices: 1040--1072  Score: 52
    Period size: 16  Copynumber: 2.1  Consensus size: 17

       1030 GTTGAGATGG

                             
       1040 TCTTATCATTAT-TTTT
          1 TCTTATCATTATATTTT

                             
       1056 TCTT-TCATTATATTTT
          1 TCTTATCATTATATTTT

             
       1072 T
          1 T

       1073 AATACATTAA


Statistics
Matches: 16,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  15    7  0.44
  16    9  0.56

ACGTcount: A:0.18, C:0.12, G:0.00, T:0.70


Consensus pattern (17 bp):   
TCTTATCATTATATTTT

Done.