Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01944.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2147
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27


Found at i:81 original size:13 final size:13

Alignment explanation


    Indices: 63--90  Score: 56
    Period size: 13  Copynumber: 2.2  Consensus size: 13

         53 AAGAGTGTTC

                         
         63 TTTATTTTAATTT
          1 TTTATTTTAATTT

                         
         76 TTTATTTTAATTT
          1 TTTATTTTAATTT

              
         89 TT
          1 TT

         91 AATTCATTTC


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   15  1.00

ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79


Consensus pattern (13 bp):   
TTTATTTTAATTT
Done.