Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g02276.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1775
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.27


Found at i:45 original size:33 final size:33

Alignment explanation


    Indices: 3--70  Score: 127
    Period size: 33  Copynumber: 2.1  Consensus size: 33

          1 AA

                                             
          3 TCATTATATGCATTCCAATTGCCAGCACTTCCT
          1 TCATTATATGCATTCCAATTGCCAGCACTTCCT

                                  *          
         36 TCATTATATGCATTCCAATTGCTAGCACTTCCT
          1 TCATTATATGCATTCCAATTGCCAGCACTTCCT

              
         69 TC
          1 TC

         71 TCTACGTTTC


Statistics
Matches: 34,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  33   34  1.00

ACGTcount: A:0.24, C:0.29, G:0.09, T:0.38


Consensus pattern (33 bp):   
TCATTATATGCATTCCAATTGCCAGCACTTCCT
Done.