Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01950.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 829

Length: 1382
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.30


Found at i:567 original size:12 final size:13

Alignment explanation


    Indices: 535--569  Score: 61
    Period size: 13  Copynumber: 2.7  Consensus size: 13

        525 ATATTTGTCT

                         
        535 CTTTCCCCAAGTA
          1 CTTTCCCCAAGTA

                         
        548 CTTTCCCCAAGTA
          1 CTTTCCCCAAGTA

               *     
        561 CTTCCCCCA
          1 CTTTCCCCA

        570 TTTTCTTTCC


Statistics
Matches: 21,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  13   21  1.00

ACGTcount: A:0.20, C:0.46, G:0.06, T:0.29


Consensus pattern (13 bp):   
CTTTCCCCAAGTA
Done.