Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g02281.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 936

Length: 1560
ACGTcount: A:0.26, C:0.19, G:0.20, T:0.34


Found at i:296 original size:17 final size:17

Alignment explanation


    Indices: 274--307  Score: 68
    Period size: 17  Copynumber: 2.0  Consensus size: 17

        264 GATCACAACT

                             
        274 TCGTTTATTAAAGAGTC
          1 TCGTTTATTAAAGAGTC

                             
        291 TCGTTTATTAAAGAGTC
          1 TCGTTTATTAAAGAGTC

        308 AAAAAGGAAG


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   17  1.00

ACGTcount: A:0.29, C:0.12, G:0.18, T:0.41


Consensus pattern (17 bp):   
TCGTTTATTAAAGAGTC
Done.