Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01990.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1672
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29


Found at i:1614 original size:89 final size:89

Alignment explanation


    Indices: 1460--1668  Score: 373
    Period size: 89  Copynumber: 2.3  Consensus size: 89

       1450 TTGCAAGCAG

                                                                             
       1460 TCCCTGTTGTTATCTGAAAAGCCTGTTTAAAATCCAAGTGAAAATGTTCGTAGCTTGTTAATGGC
          1 TCCCTGTTGTTATCTGAAAAGCCTGTTTAAAATCCAAGTGAAAATGTTCGTAGCTTGTTAATGGC

                    *   *           
       1525 TTTATCTTCTCTTAGGACAATGTA
         66 TTTATCTTATCTGAGGACAATGTA

                                                                 *      *    
       1549 TCCCTGTTGTTATCTGAAAAGCCTGTTTAAAATCCAAGTGAAAATGTTCGTAGTTTGTTACTGGC
          1 TCCCTGTTGTTATCTGAAAAGCCTGTTTAAAATCCAAGTGAAAATGTTCGTAGCTTGTTAATGGC

                      *             
       1614 TTTATCTTATGTGAGGACAATGTA
         66 TTTATCTTATCTGAGGACAATGTA

                                           
       1638 TCCCTGTTGTTATCTGAAAAGCCTGTTTAAA
          1 TCCCTGTTGTTATCTGAAAAGCCTGTTTAAA

       1669 CTCC


Statistics
Matches: 115,  Mismatches: 5, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  89  115  1.00

ACGTcount: A:0.27, C:0.16, G:0.19, T:0.38


Consensus pattern (89 bp):   
TCCCTGTTGTTATCTGAAAAGCCTGTTTAAAATCCAAGTGAAAATGTTCGTAGCTTGTTAATGGC
TTTATCTTATCTGAGGACAATGTA
Done.