Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g02026.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 921

Length: 1535
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.33


Found at i:1311 original size:12 final size:12

Alignment explanation


    Indices: 1294--1327  Score: 50
    Period size: 12  Copynumber: 2.8  Consensus size: 12

       1284 TGAAGCTGAT

                      * 
       1294 ATACATATATGC
          1 ATACATATATAC

                   *    
       1306 ATACATACATAC
          1 ATACATATATAC

                      
       1318 ATACATATAT
          1 ATACATATAT

       1328 TTGTTTTATA


Statistics
Matches: 19,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  12   19  1.00

ACGTcount: A:0.47, C:0.18, G:0.03, T:0.32


Consensus pattern (12 bp):   
ATACATATATAC
Done.