Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga09g02028.F1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3375
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Found at i:877 original size:222 final size:222
Alignment explanation
Indices: 491--933 Score: 886
Period size: 222 Copynumber: 2.0 Consensus size: 222
481 TGGTGTTGGA
491 GCTTTATTTAAGTTCAAATATTTGAGTATTCTTGTTTCATGAATGTCTTGTTACTTTGCATCAAA
1 GCTTTATTTAAGTTCAAATATTTGAGTATTCTTGTTTCATGAATGTCTTGTTACTTTGCATCAAA
556 TTAAGTTGGTCTTTGTCGGCGTTCTATAATGCTGCATATTTAGCAATAATCGGGATCAGGTATTG
66 TTAAGTTGGTCTTTGTCGGCGTTCTATAATGCTGCATATTTAGCAATAATCGGGATCAGGTATTG
621 CTTGAAAATGACTTCTTTTGTTTATTATTGTAACCAACGTGCATACGAAGCTGGCCTTGGGAGGA
131 CTTGAAAATGACTTCTTTTGTTTATTATTGTAACCAACGTGCATACGAAGCTGGCCTTGGGAGGA
686 CTGGATGTTTTATCCAGAGTTCCAGGT
196 CTGGATGTTTTATCCAGAGTTCCAGGT
713 GCTTTATTTAAGTTCAAATATTTGAGTATTCTTGTTTCATGAATGTCTTGTTACTTTGCATCAAA
1 GCTTTATTTAAGTTCAAATATTTGAGTATTCTTGTTTCATGAATGTCTTGTTACTTTGCATCAAA
778 TTAAGTTGGTCTTTGTCGGCGTTCTATAATGCTGCATATTTAGCAATAATCGGGATCAGGTATTG
66 TTAAGTTGGTCTTTGTCGGCGTTCTATAATGCTGCATATTTAGCAATAATCGGGATCAGGTATTG
843 CTTGAAAATGACTTCTTTTGTTTATTATTGTAACCAACGTGCATACGAAGCTGGCCTTGGGAGGA
131 CTTGAAAATGACTTCTTTTGTTTATTATTGTAACCAACGTGCATACGAAGCTGGCCTTGGGAGGA
908 CTGGATGTTTTATCCAGAGTTCCAGG
196 CTGGATGTTTTATCCAGAGTTCCAGG
934 ATCTAGAACT
Statistics
Matches: 221, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
222 221 1.00
ACGTcount: A:0.24, C:0.15, G:0.21, T:0.40
Consensus pattern (222 bp):
GCTTTATTTAAGTTCAAATATTTGAGTATTCTTGTTTCATGAATGTCTTGTTACTTTGCATCAAA
TTAAGTTGGTCTTTGTCGGCGTTCTATAATGCTGCATATTTAGCAATAATCGGGATCAGGTATTG
CTTGAAAATGACTTCTTTTGTTTATTATTGTAACCAACGTGCATACGAAGCTGGCCTTGGGAGGA
CTGGATGTTTTATCCAGAGTTCCAGGT
Done.