Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g02059.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3853
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.34


Found at i:2195 original size:44 final size:45

Alignment explanation


    Indices: 2132--2226  Score: 183
    Period size: 44  Copynumber: 2.1  Consensus size: 45

       2122 TGTAAGAGTA

                                                         
       2132 TGTTTTCTTATCGATCTAATTGCAGATGTAATTTTGTTGAGTG-T
          1 TGTTTTCTTATCGATCTAATTGCAGATGTAATTTTGTTGAGTGTT

                                                         
       2176 TGTTTTCTTATCGATCTAATTGCAGATGTAATTTTGTTGAGTGTT
          1 TGTTTTCTTATCGATCTAATTGCAGATGTAATTTTGTTGAGTGTT

                  
       2221 TGTTTT
          1 TGTTTT

       2227 TCTCTCTCTT


Statistics
Matches: 50,  Mismatches: 0, Indels: 1
        0.98            0.00        0.02

Matches are distributed among these distances:
  44   43  0.86
  45    7  0.14

ACGTcount: A:0.19, C:0.08, G:0.20, T:0.53


Consensus pattern (45 bp):   
TGTTTTCTTATCGATCTAATTGCAGATGTAATTTTGTTGAGTGTT
Done.