Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g02288.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1839
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28


Found at i:1720 original size:34 final size:34

Alignment explanation


    Indices: 1677--1743  Score: 107
    Period size: 34  Copynumber: 2.0  Consensus size: 34

       1667 TCAACTCTGT

                            **       *        
       1677 CATTATATATACATAAGTTATATATGAACACCCG
          1 CATTATATATACATAAACTATATATAAACACCCG

                                             
       1711 CATTATATATACATAAACTATATATAAACACCC
          1 CATTATATATACATAAACTATATATAAACACCC

       1744 ACACTCACAC


Statistics
Matches: 30,  Mismatches: 3, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  34   30  1.00

ACGTcount: A:0.45, C:0.19, G:0.04, T:0.31


Consensus pattern (34 bp):   
CATTATATATACATAAACTATATATAAACACCCG
Done.