Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g02069.M3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5710
ACGTcount: A:0.27, C:0.17, G:0.21, T:0.34


Found at i:5514 original size:26 final size:26

Alignment explanation


    Indices: 5485--5534  Score: 82
    Period size: 26  Copynumber: 1.9  Consensus size: 26

       5475 AAACCGATTA

                                      
       5485 AGATTAATTACAATAAATTAAATCTG
          1 AGATTAATTACAATAAATTAAATCTG

                 *      *           
       5511 AGATTGATTACAGTAAATTAAATC
          1 AGATTAATTACAATAAATTAAATC

       5535 AGTTGATTTT


Statistics
Matches: 22,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  26   22  1.00

ACGTcount: A:0.48, C:0.08, G:0.10, T:0.34


Consensus pattern (26 bp):   
AGATTAATTACAATAAATTAAATCTG
Done.