Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g02069.M5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4417
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32


Found at i:4221 original size:26 final size:26

Alignment explanation


    Indices: 4192--4241  Score: 82
    Period size: 26  Copynumber: 1.9  Consensus size: 26

       4182 AAACCGATTA

                                      
       4192 AGATTAATTACAATAAATTAAATCTG
          1 AGATTAATTACAATAAATTAAATCTG

                 *      *           
       4218 AGATTGATTACAGTAAATTAAATC
          1 AGATTAATTACAATAAATTAAATC

       4242 AGTTGATTTT


Statistics
Matches: 22,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  26   22  1.00

ACGTcount: A:0.48, C:0.08, G:0.10, T:0.34


Consensus pattern (26 bp):   
AGATTAATTACAATAAATTAAATCTG
Done.