Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g02290.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3170
ACGTcount: A:0.29, C:0.13, G:0.18, T:0.40


Found at i:48 original size:17 final size:17

Alignment explanation


    Indices: 26--58  Score: 50
    Period size: 17  Copynumber: 1.9  Consensus size: 17

         16 TCTCTAGTAT

                              
         26 TTTTCTTCTT-TCTCTTG
          1 TTTTCTT-TTCTCTCTTG

                            
         43 TTTTCTTTTCTCTCTT
          1 TTTTCTTTTCTCTCTT

         59 CCTCCTTTAT


Statistics
Matches: 15,  Mismatches: 0, Indels: 2
        0.88            0.00        0.12

Matches are distributed among these distances:
  16    2  0.13
  17   13  0.87

ACGTcount: A:0.00, C:0.24, G:0.03, T:0.73


Consensus pattern (17 bp):   
TTTTCTTTTCTCTCTTG

Found at i:99 original size:6 final size:6

Alignment explanation


    Indices: 88--112  Score: 50
    Period size: 6  Copynumber: 4.2  Consensus size: 6

         78 TAACAAACCG

                                         
         88 CTGCCT CTGCCT CTGCCT CTGCCT C
          1 CTGCCT CTGCCT CTGCCT CTGCCT C

        113 CACACCTTCC


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   19  1.00

ACGTcount: A:0.00, C:0.52, G:0.16, T:0.32


Consensus pattern (6 bp):   
CTGCCT

Done.