Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g02085.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3425
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.28


Found at i:190 original size:2 final size:2

Alignment explanation


    Indices: 183--223  Score: 82
    Period size: 2  Copynumber: 20.5  Consensus size: 2

        173 TGTTTCCAGT

                                                                         
        183 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
          1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G

        224 GGTCTCATGT


Statistics
Matches: 39,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   39  1.00

ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00


Consensus pattern (2 bp):   
GA

Done.