Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g02091.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 564

Length: 940
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30


Found at i:846 original size:48 final size:48

Alignment explanation


    Indices: 787--882  Score: 183
    Period size: 48  Copynumber: 2.0  Consensus size: 48

        777 ATTGAGCTAC

                                                 *          
        787 GGCCTAAAGATACTGGTAGCTAGGTAGATTCTGGATTTGAGTTTGGTA
          1 GGCCTAAAGATACTGGTAGCTAGGTAGATTCTGGATTGGAGTTTGGTA

                                                            
        835 GGCCTAAAGATACTGGTAGCTAGGTAGATTCTGGATTGGAGTTTGGTA
          1 GGCCTAAAGATACTGGTAGCTAGGTAGATTCTGGATTGGAGTTTGGTA

        883 AGCTCAGCCT


Statistics
Matches: 47,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  48   47  1.00

ACGTcount: A:0.25, C:0.10, G:0.32, T:0.32


Consensus pattern (48 bp):   
GGCCTAAAGATACTGGTAGCTAGGTAGATTCTGGATTGGAGTTTGGTA
Done.