Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g02094.F8

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4194
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.30


Found at i:72 original size:5 final size:5

Alignment explanation


    Indices: 57--90  Score: 59
    Period size: 5  Copynumber: 6.6  Consensus size: 5

         47 CTGCAGTCGA

                                                    
         57 CACGCC CACGC CACGC CACGC CACGC CACGC CAC
          1 CACG-C CACGC CACGC CACGC CACGC CACGC CAC

         91 AGCTCCGCCA


Statistics
Matches: 28,  Mismatches: 0, Indels: 1
        0.97            0.00        0.03

Matches are distributed among these distances:
   5   24  0.86
   6    4  0.14

ACGTcount: A:0.21, C:0.62, G:0.18, T:0.00


Consensus pattern (5 bp):   
CACGC

Done.