Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g02101.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3512
ACGTcount: A:0.30, C:0.16, G:0.17, T:0.37


Found at i:969 original size:25 final size:25

Alignment explanation


    Indices: 924--973  Score: 68
    Period size: 25  Copynumber: 2.0  Consensus size: 25

        914 GGGCAGAGTG

                                     
        924 GAAAAGTGAAAGAATAGAAAGAAAA
          1 GAAAAGTGAAAGAATAGAAAGAAAA

                                       
        949 GAAAAGTAGAAA-AAT-GAAAAGAAAA
          1 GAAAAGT-GAAAGAATAG-AAAGAAAA

        974 TTAATTCTAA


Statistics
Matches: 23,  Mismatches: 0, Indels: 4
        0.85            0.00        0.15

Matches are distributed among these distances:
  24    1  0.04
  25   18  0.78
  26    4  0.17

ACGTcount: A:0.70, C:0.00, G:0.22, T:0.08


Consensus pattern (25 bp):   
GAAAAGTGAAAGAATAGAAAGAAAA

Found at i:1153 original size:7 final size:7

Alignment explanation


    Indices: 1141--1165  Score: 50
    Period size: 7  Copynumber: 3.6  Consensus size: 7

       1131 ATATATATTT

                   
       1141 TTTTAAA
          1 TTTTAAA

                   
       1148 TTTTAAA
          1 TTTTAAA

                   
       1155 TTTTAAA
          1 TTTTAAA

                
       1162 TTTT
          1 TTTT

       1166 TTCTCATTTT


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   18  1.00

ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64


Consensus pattern (7 bp):   
TTTTAAA
Done.