Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g02107.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 588

Length: 980
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29


Found at i:44 original size:3 final size:3

Alignment explanation


    Indices: 31--68  Score: 58
    Period size: 3  Copynumber: 12.7  Consensus size: 3

         21 TTGTTAGAAT

                 *                                *           
         31 AGC ATC AGC AGC AGC AGC AGC AGC AGC AGG AGC AGC AG
          1 AGC AGC AGC AGC AGC AGC AGC AGC AGC AGC AGC AGC AG

         69 GCCTAAACGA


Statistics
Matches: 31,  Mismatches: 4, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
   3   31  1.00

ACGTcount: A:0.34, C:0.29, G:0.34, T:0.03


Consensus pattern (3 bp):   
AGC

Done.