Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g02110.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5372
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31


Found at i:2173 original size:12 final size:12

Alignment explanation


    Indices: 2158--2182  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

       2148 TCTTTCATTG

                        
       2158 TTTCTAATACAT
          1 TTTCTAATACAT

                        
       2170 TTTCTAATACAT
          1 TTTCTAATACAT

             
       2182 T
          1 T

       2183 CCCCCTTGAA


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.32, C:0.16, G:0.00, T:0.52


Consensus pattern (12 bp):   
TTTCTAATACAT
Done.