Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g02119.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4223
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.34


Found at i:1816 original size:25 final size:25

Alignment explanation


    Indices: 1782--1836  Score: 110
    Period size: 25  Copynumber: 2.2  Consensus size: 25

       1772 CAAGAGTACC

                                     
       1782 TTGGCCACACTCTCATCCCGTTTAA
          1 TTGGCCACACTCTCATCCCGTTTAA

                                     
       1807 TTGGCCACACTCTCATCCCGTTTAA
          1 TTGGCCACACTCTCATCCCGTTTAA

                 
       1832 TTGGC
          1 TTGGC

       1837 ACCACACATT


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   30  1.00

ACGTcount: A:0.18, C:0.35, G:0.15, T:0.33


Consensus pattern (25 bp):   
TTGGCCACACTCTCATCCCGTTTAA
Done.