Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g02132.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5181
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.30


Found at i:4811 original size:22 final size:22

Alignment explanation


    Indices: 4787--4829  Score: 61
    Period size: 22  Copynumber: 2.0  Consensus size: 22

       4777 AAAAACTTTA

                         * *      
       4787 AAAACT-TGCCAATATGCAGAC
          1 AAAACTGTGCCAACAGGCAGAC

                                  
       4808 AAAACTGTGCCAACAGGCAGAC
          1 AAAACTGTGCCAACAGGCAGAC

       4830 TTATATGAGC


Statistics
Matches: 19,  Mismatches: 2, Indels: 1
        0.86            0.09        0.05

Matches are distributed among these distances:
  21    6  0.32
  22   13  0.68

ACGTcount: A:0.42, C:0.26, G:0.19, T:0.14


Consensus pattern (22 bp):   
AAAACTGTGCCAACAGGCAGAC
Done.