Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g02297.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1762
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29


Found at i:535 original size:45 final size:45

Alignment explanation


    Indices: 471--563  Score: 168
    Period size: 45  Copynumber: 2.1  Consensus size: 45

        461 AATCCGAGAA

                                                         
        471 CTGTGATTGCTTACAAGGTATGCCATTCCTTTTACAGAGTTAGCT
          1 CTGTGATTGCTTACAAGGTATGCCATTCCTTTTACAGAGTTAGCT

                                    *         *          
        516 CTGTGATTGCTTACAAGGTATGCCGTTCCTTTTAGAGAGTTAGCT
          1 CTGTGATTGCTTACAAGGTATGCCATTCCTTTTACAGAGTTAGCT

               
        561 CTG
          1 CTG

        564 GTTTATATTT


Statistics
Matches: 46,  Mismatches: 2, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  45   46  1.00

ACGTcount: A:0.20, C:0.19, G:0.23, T:0.38


Consensus pattern (45 bp):   
CTGTGATTGCTTACAAGGTATGCCATTCCTTTTACAGAGTTAGCT
Done.