Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g02166.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 552

Length: 920
ACGTcount: A:0.22, C:0.29, G:0.18, T:0.31


Found at i:567 original size:33 final size:33

Alignment explanation


    Indices: 516--595  Score: 133
    Period size: 33  Copynumber: 2.4  Consensus size: 33

        506 TCCCATTGTG

                *               *             
        516 CCGGAACCGACACCATCTGCCGAGGTGCCTGATT
          1 CCGGCACC-ACACCATCTGCAGAGGTGCCTGATT

                                             
        550 CCGGCACCACACCATCTGCAGAGGTGCCTGATT
          1 CCGGCACCACACCATCTGCAGAGGTGCCTGATT

                         
        583 CCGGCACCACACC
          1 CCGGCACCACACC

        596 GGCTCTAACT


Statistics
Matches: 44,  Mismatches: 2, Indels: 1
        0.94            0.04        0.02

Matches are distributed among these distances:
  33   37  0.84
  34    7  0.16

ACGTcount: A:0.21, C:0.40, G:0.24, T:0.15


Consensus pattern (33 bp):   
CCGGCACCACACCATCTGCAGAGGTGCCTGATT
Done.