Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g02169.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1839
ACGTcount: A:0.31, C:0.22, G:0.26, T:0.21


Found at i:1300 original size:9 final size:9

Alignment explanation


    Indices: 1286--1319  Score: 68
    Period size: 9  Copynumber: 3.8  Consensus size: 9

       1276 TCCCGAGAGG

                     
       1286 AAGAAGAAC
          1 AAGAAGAAC

                     
       1295 AAGAAGAAC
          1 AAGAAGAAC

                     
       1304 AAGAAGAAC
          1 AAGAAGAAC

                   
       1313 AAGAAGA
          1 AAGAAGA

       1320 TGAAAGGAGA


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   25  1.00

ACGTcount: A:0.68, C:0.09, G:0.24, T:0.00


Consensus pattern (9 bp):   
AAGAAGAAC
Done.