Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g02171.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2687
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29


Found at i:1151 original size:18 final size:18

Alignment explanation


    Indices: 1130--1177  Score: 60
    Period size: 18  Copynumber: 2.7  Consensus size: 18

       1120 TAGGCCCAGT

                     * *      
       1130 GATTACTCCCGGCCTAGC
          1 GATTACTCCAGACCTAGC

                    *        *
       1148 GATTACTCTAGACCTAGT
          1 GATTACTCCAGACCTAGC

                        
       1166 GATTACTCCAGA
          1 GATTACTCCAGA

       1178 TGGGGTTCAT


Statistics
Matches: 25,  Mismatches: 5, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  18   25  1.00

ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27


Consensus pattern (18 bp):   
GATTACTCCAGACCTAGC
Done.