Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g02171.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3229
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.31


Found at i:1693 original size:18 final size:18

Alignment explanation


    Indices: 1672--1719  Score: 60
    Period size: 18  Copynumber: 2.7  Consensus size: 18

       1662 TAGGCCCAGT

                     * *      
       1672 GATTACTCCCGGCCTAGC
          1 GATTACTCCAGACCTAGC

                    *        *
       1690 GATTACTCTAGACCTAGT
          1 GATTACTCCAGACCTAGC

                        
       1708 GATTACTCCAGA
          1 GATTACTCCAGA

       1720 TGGGGTTCAT


Statistics
Matches: 25,  Mismatches: 5, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  18   25  1.00

ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27


Consensus pattern (18 bp):   
GATTACTCCAGACCTAGC
Done.