Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g02174.P2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12296
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30


Found at i:10487 original size:55 final size:55

Alignment explanation


    Indices: 10403--10513  Score: 213
    Period size: 55  Copynumber: 2.0  Consensus size: 55

      10393 CCCTAAATAG

                                                                   
      10403 AACCATATCGAACCTCTAGTGGCCATCCGATTAGGTGTTCTATTTCTCATTTCTT
          1 AACCATATCGAACCTCTAGTGGCCATCCGATTAGGTGTTCTATTTCTCATTTCTT

                                  *                                
      10458 AACCATATCGAACCTCTAGTGGTCATCCGATTAGGTGTTCTATTTCTCATTTCTT
          1 AACCATATCGAACCTCTAGTGGCCATCCGATTAGGTGTTCTATTTCTCATTTCTT

             
      10513 A
          1 A

      10514 CTTTGAATTC


Statistics
Matches: 55,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  55   55  1.00

ACGTcount: A:0.23, C:0.24, G:0.14, T:0.39


Consensus pattern (55 bp):   
AACCATATCGAACCTCTAGTGGCCATCCGATTAGGTGTTCTATTTCTCATTTCTT
Done.