Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g02179.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1835
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26


Found at i:1373 original size:18 final size:19

Alignment explanation


    Indices: 1340--1375  Score: 56
    Period size: 18  Copynumber: 1.9  Consensus size: 19

       1330 ATGTTAAGTC

                       *       
       1340 CTAAACAAAAGCAAAGAAT
          1 CTAAACAAAAGAAAAGAAT

                              
       1359 CTAAA-AAAAGAAAAGAA
          1 CTAAACAAAAGAAAAGAA

       1376 AGCTGATGAC


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  18   11  0.69
  19    5  0.31

ACGTcount: A:0.69, C:0.11, G:0.11, T:0.08


Consensus pattern (19 bp):   
CTAAACAAAAGAAAAGAAT
Done.