Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga09g02185.N2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3386
ACGTcount: A:0.26, C:0.39, G:0.10, T:0.25
Found at i:341 original size:48 final size:48
Alignment explanation
Indices: 251--386 Score: 130
Period size: 48 Copynumber: 2.8 Consensus size: 48
241 TACTCTTCAC
* * * * * * * *
251 CTCCTCCACCACCTTATGAGTATAAGTCACCTCCACCACCTTC-TCTAT
1 CTCCACCACCACCATACGTGTATAAATCACCACCACCTCCTTCGCCT-T
* * *
299 CTCCCCCACCACCATACGTGTATAAATCTCCACCATCTCCTTCGCCTT
1 CTCCACCACCACCATACGTGTATAAATCACCACCACCTCCTTCGCCTT
* * *
347 CTCCACCACCACCTTATGTGTATAAGTCACCACCACCTCC
1 CTCCACCACCACCATACGTGTATAAATCACCACCACCTCC
387 ATCGAAACAT
Statistics
Matches: 71, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
48 69 0.97
49 2 0.03
ACGTcount: A:0.23, C:0.44, G:0.07, T:0.26
Consensus pattern (48 bp):
CTCCACCACCACCATACGTGTATAAATCACCACCACCTCCTTCGCCTT
Found at i:479 original size:48 final size:48
Alignment explanation
Indices: 409--1202 Score: 601
Period size: 48 Copynumber: 16.6 Consensus size: 48
399 AGTACTGAAC
* * * * *
409 CCTCCATACCACTATAAATCTCCACCACCACCGTCTCCATCACCTCCT
1 CCTCCATACTACTACAAGTCTCCACCACCACCATCTCCATCACCACCT
* * * * *
457 CCTCCATACTATTATAAGTCTCCTCCACCACCATCCCCGTCACCACCT
1 CCTCCATACTACTACAAGTCTCCACCACCACCATCTCCATCACCACCT
* * *
505 CCTCTATACTACTACAAGTCTCCACCACCACTATCCCCATCACCACCT
1 CCTCCATACTACTACAAGTCTCCACCACCACCATCTCCATCACCACCT
* * * * *
553 CCCCCGTACTACTACAAGTCTCCACCACCTCCGTC-CCTATCCCCACCT
1 CCTCCATACTACTACAAGTCTCCACCACCACCATCTCC-ATCACCACCT
* * * * * *
601 CCTCCATATTACTATAAGTCTCCACCACCTCCGTCCCCGTCACCACCT
1 CCTCCATACTACTACAAGTCTCCACCACCACCATCTCCATCACCACCT
* * * * * * *
649 CCTCCTTATTACTACAAATCCCCACCACCTCCATCTCCTTCCCCACCT
1 CCTCCATACTACTACAAGTCTCCACCACCACCATCTCCATCACCACCT
* * * * *
697 CCTCCATACTACTACAAGTCCCCACCTCCTCCATCTCCATCTCCACTT
1 CCTCCATACTACTACAAGTCTCCACCACCACCATCTCCATCACCACCT
* * *
745 CCTCCATATTACTACAAGTCTCCACCACCACCGTCCCCATCACCACCT
1 CCTCCATACTACTACAAGTCTCCACCACCACCATCTCCATCACCACCT
* * * * * * * * *
793 CCTCCTTACTACTACAAATCCCCGCCACCTCTATCTCCTTCCCCACCA
1 CCTCCATACTACTACAAGTCTCCACCACCACCATCTCCATCACCACCT
* * * * * ** * * *
841 CCACCTTACTACTACAAGTCCCCACCACCTCCA-GTGAAGTCTCCCCCA
1 CCTCCATACTACTACAAGTCTCCACCACCACCATCTCCA-TCACCACCT
* * * * * * *
889 CCACCATACTACTATAAGTCTCCTCCTCCACCTTCTCCTTCACCACCC
1 CCTCCATACTACTACAAGTCTCCACCACCACCATCTCCATCACCACCT
* * * * * * *
937 CCACCTTACTATTATAAGTCTCCACCACCACCATCACCATCTCCACCA
1 CCTCCATACTACTACAAGTCTCCACCACCACCATCTCCATCACCACCT
* * * * * * *
985 CCTACTTACTACTACAAATCTCCACCACCACCCTCACCATCTCCACCA
1 CCTCCATACTACTACAAGTCTCCACCACCACCATCTCCATCACCACCT
* * * * * ** * * *
1033 CCACCTTACTACTACAAGTCGCCACCACCTCCA-GTGAAGTCTCCCCCA
1 CCTCCATACTACTACAAGTCTCCACCACCACCATCTCCA-TCACCACCT
* * * * * *
1081 CCACCATACTATTACAAGTCTCCCCCACCACCATCACCATCTCCACCA
1 CCTCCATACTACTACAAGTCTCCACCACCACCATCTCCATCACCACCT
* * * * *
1129 CCTCCTTACTACTACAAGTCTCCACCACCACCTTCACCATCTCCACCA
1 CCTCCATACTACTACAAGTCTCCACCACCACCATCTCCATCACCACCT
* *
1177 CCT---TACTACTATAAGTCTCCGCCACC
1 CCTCCATACTACTACAAGTCTCCACCACC
1203 TCCTCCGCAT
Statistics
Matches: 611, Mismatches: 129, Indels: 15
0.81 0.17 0.02
Matches are distributed among these distances:
45 21 0.03
47 4 0.01
48 582 0.95
49 4 0.01
ACGTcount: A:0.24, C:0.49, G:0.04, T:0.23
Consensus pattern (48 bp):
CCTCCATACTACTACAAGTCTCCACCACCACCATCTCCATCACCACCT
Found at i:586 original size:27 final size:27
Alignment explanation
Indices: 547--634 Score: 62
Period size: 27 Copynumber: 3.5 Consensus size: 27
537 ATCCCCATCA
* *
547 CCACCTCCCCCGTACTACTACAAGTCT
1 CCACCACCTCCGTACTACTACAAGTCT
* *
574 CCACCACCTCCGT-C--C--CTA-TCC
1 CCACCACCTCCGTACTACTACAAGTCT
* * * *
595 CCACCTCCTCCATATTACTATAAGTCT
1 CCACCACCTCCGTACTACTACAAGTCT
622 CCACCACCTCCGT
1 CCACCACCTCCGT
635 CCCCGTCACC
Statistics
Matches: 43, Mismatches: 12, Indels: 12
0.64 0.18 0.18
Matches are distributed among these distances:
21 13 0.30
22 2 0.05
24 2 0.05
26 2 0.05
27 24 0.56
ACGTcount: A:0.20, C:0.50, G:0.06, T:0.24
Consensus pattern (27 bp):
CCACCACCTCCGTACTACTACAAGTCT
Found at i:729 original size:27 final size:27
Alignment explanation
Indices: 643--770 Score: 91
Period size: 27 Copynumber: 5.2 Consensus size: 27
633 GTCCCCGTCA
* * *
643 CCACCTCCTCCTTATTACTACAAATCC
1 CCACCTCCTCCATACTACTACAAGTCC
* *
670 CCACCACCTCCAT-CT-C--C--TTCC
1 CCACCTCCTCCATACTACTACAAGTCC
691 CCACCTCCTCCATACTACTACAAGTCC
1 CCACCTCCTCCATACTACTACAAGTCC
*
718 CCACCTCCTCCAT-CT-C--C-A-TCT
1 CCACCTCCTCCATACTACTACAAGTCC
* * *
739 CCACTTCCTCCATATTACTACAAGTCT
1 CCACCTCCTCCATACTACTACAAGTCC
766 CCACC
1 CCACC
771 ACCACCGTCC
Statistics
Matches: 79, Mismatches: 10, Indels: 24
0.70 0.09 0.21
Matches are distributed among these distances:
21 29 0.37
22 4 0.05
23 4 0.05
25 4 0.05
26 4 0.05
27 34 0.43
ACGTcount: A:0.22, C:0.50, G:0.02, T:0.27
Consensus pattern (27 bp):
CCACCTCCTCCATACTACTACAAGTCC
Found at i:1081 original size:24 final size:27
Alignment explanation
Indices: 1054--1119 Score: 75
Period size: 27 Copynumber: 2.5 Consensus size: 27
1044 CTACAAGTCG
*
1054 CCACCACC-T-CCAGT-GAAGTCTCCC
1 CCACCACCATACCAGTACAAGTCTCCC
* *
1078 CCACCACCATACTATTACAAGTCTCCC
1 CCACCACCATACCAGTACAAGTCTCCC
1105 CCACCACCATCACCA
1 CCACCACCAT-ACCA
1120 TCTCCACCAC
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
24 8 0.24
25 1 0.03
26 3 0.09
27 19 0.56
28 3 0.09
ACGTcount: A:0.27, C:0.50, G:0.06, T:0.17
Consensus pattern (27 bp):
CCACCACCATACCAGTACAAGTCTCCC
Found at i:1195 original size:24 final size:24
Alignment explanation
Indices: 1030--1203 Score: 82
Period size: 24 Copynumber: 7.4 Consensus size: 24
1020 ACCATCTCCA
*
1030 CCACCACCTTACTACTACAAGTCG
1 CCACCACCTTACTACTACAAGTCT
* * *
1054 CCACCACC-T-CCAGT-GAAGTCT
1 CCACCACCTTACTACTACAAGTCT
* *
1075 CCCCCACCACCATACTATTACAAGTCT
1 ---CCACCACCTTACTACTACAAGTCT
* * *
1102 CCCCCACC--ACCA-TCACCA-TCT
1 CCACCACCTTACTACT-ACAAGTCT
1123 CCACCACCTCCTTACTACTACAAGTCT
1 CCACCA---CCTTACTACTACAAGTCT
* *
1150 CCACCACC--ACCTTC-ACCA-TCT
1 CCACCACCTTA-CTACTACAAGTCT
*
1171 CCACCACCTTACTACTATAAGTCT
1 CCACCACCTTACTACTACAAGTCT
*
1195 CCGCCACCT
1 CCACCACCT
1204 CCTCCGCATT
Statistics
Matches: 112, Mismatches: 19, Indels: 38
0.66 0.11 0.22
Matches are distributed among these distances:
21 25 0.22
22 16 0.14
23 7 0.06
24 38 0.34
25 1 0.01
26 9 0.08
27 16 0.14
ACGTcount: A:0.26, C:0.48, G:0.05, T:0.21
Consensus pattern (24 bp):
CCACCACCTTACTACTACAAGTCT
Found at i:1825 original size:36 final size:36
Alignment explanation
Indices: 1785--1874 Score: 135
Period size: 36 Copynumber: 2.5 Consensus size: 36
1775 CACCATACTA
* * *
1785 TTATAAGTCCCCGCCACCACCAAGCCCCACTTATGT
1 TTATAAGTCACCACCACCACCAAGCCCCACCTATGT
*
1821 TTATAAGTCACCACCACCACCAAGCCCTACCTATGT
1 TTATAAGTCACCACCACCACCAAGCCCCACCTATGT
*
1857 TTACAAGTCACCACCACC
1 TTATAAGTCACCACCACC
1875 TCCACCATAC
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 49 1.00
ACGTcount: A:0.29, C:0.41, G:0.09, T:0.21
Consensus pattern (36 bp):
TTATAAGTCACCACCACCACCAAGCCCCACCTATGT
Found at i:1922 original size:48 final size:48
Alignment explanation
Indices: 1870--2799 Score: 511
Period size: 48 Copynumber: 19.2 Consensus size: 48
1860 CAAGTCACCA
* *
1870 CCACCTCCACCATACTACTACAAATCTCCACCCCCACCAGTCCACTCT
1 CCACCACCACCATACTACTACAAATCTCCACCACCACCAGTCCACTCT
* * * * *
1918 CCACC-CCAACCATATTATTACAAGTCTCCACCACCACC-TTCTC-CTTCA
1 CCACCACC-ACCATACTACTACAAATCTCCACCACCACCAGTC-CAC-TCT
* * * * * *
1966 CCACCTCCACCATATTATTACAAGTCTCCACCACCACC-TTCTC-CTTCA
1 CCACCACCACCATACTACTACAAATCTCCACCACCACCAGTC-CAC-TCT
* * * * *
2014 CCACCTCCACCATACTACTACAAATCACCTCCACCTCC--TTCACCATCT
1 CCACCACCACCATACTACTACAAATCTCCACCACCACCAGTCCA-C-TCT
* * * * * ** ** *
2062 CCTCCACCGCCATACTACTACCAATCACCACCACCTCCAGTGAAGGCC
1 CCACCACCACCATACTACTACAAATCTCCACCACCACCAGTCCACTCT
** * * * * * *
2110 CCTGCACCAACC-TACCATTACAACTCCCCTCCTCCACCA-T-CATCATCT
1 CCACCACC-ACCATACTACTACAAATCTCCACCACCACCAGTCCA-C-TCT
** * * * * * *
2158 CTTCCTCCTCCTTACTACTACAAATCCCCACCACCTCCATCTCCA-TCT
1 CCACCACCACCATACTACTACAAATCTCCACCACCACCA-GTCCACTCT
* * * *
2206 CCATTACCACCACCTTCATACTATTACAAATCCCCTCCTCCACC-GTCGC-CATCT
1 CC---ACCACCA-C--CATACTACTACAAATCTCCACCACCACCAGTC-CAC-TCT
* * * *
2260 CCACCTCCACCTTACTACTACAAGTCCCCACCACCACCAGTCCACTCT
1 CCACCACCACCATACTACTACAAATCTCCACCACCACCAGTCCACTCT
2308 CCACCACCACCATACTACTACAAATCTCCACCACCACCAGTCCACTCT
1 CCACCACCACCATACTACTACAAATCTCCACCACCACCAGTCCACTCT
* * * *
2356 CCACCACCACCATACTATTACAAATCTCCACCACCACCAATTCATTCT
1 CCACCACCACCATACTACTACAAATCTCCACCACCACCAGTCCACTCT
* * * * **
2404 CCTCCACCACCATACTACTACAAATCACCACCTCCTCCTTCTCCA-TCT
1 CCACCACCACCATACTACTACAAATCTCCACCACCACC-AGTCCACTCT
* * * * * * *
2452 CCCCCACCACCATACTATTACAAGTCCCCACCACCACCAGTCTATTCC
1 CCACCACCACCATACTACTACAAATCTCCACCACCACCAGTCCACTCT
* * * * ** *
2500 CCTCCACCACCATACTATTACAAATCACCACCACCTCCAGTGAAGGT-T
1 CCACCACCACCATACTACTACAAATCTCCACCACCACCAGTCCA-CTCT
* * * * * * * * *
2548 CCAGCACCAGCTTACCACTACAACTCCCCTCCTCCACCA-T-CACCATCA
1 CCACCACCACCATACTACTACAAATCTCCACCACCACCAGTCCA-C-TCT
* * * * *
2596 CCACCGCCACCATACTACTACAAATCCCCACCTCCTCCAAGTCCA-TCG
1 CCACCACCACCATACTACTACAAATCTCCACCACCACC-AGTCCACTCT
* * * *
2644 CCACCACTACCATACTACTACAAATCTCCTCCTCCCCCA-T-CACCATCT
1 CCACCACCACCATACTACTACAAATCTCCACCACCACCAGTCCA-C-TCT
* * * * * * *
2692 CCTCCTCCTCCCTACTACTACAAATCTCCACCACCTCCATCTCCA-TCA
1 CCACCACCACCATACTACTACAAATCTCCACCACCACCA-GTCCACTCT
* *
2740 CCACCACCACCATACTACTACAAATCTCCACCTCCCCCA-T-CACCTTCT
1 CCACCACCACCATACTACTACAAATCTCCACCACCACCAGTCCA-C-TCT
2788 CCACCACCACCA
1 CCACCACCACCA
2800 GTCCACTCTC
Statistics
Matches: 694, Mismatches: 145, Indels: 86
0.75 0.16 0.09
Matches are distributed among these distances:
45 4 0.01
46 5 0.01
47 15 0.02
48 603 0.87
49 13 0.02
50 6 0.01
51 16 0.02
52 3 0.00
53 1 0.00
54 28 0.04
ACGTcount: A:0.27, C:0.49, G:0.03, T:0.21
Consensus pattern (48 bp):
CCACCACCACCATACTACTACAAATCTCCACCACCACCAGTCCACTCT
Found at i:2311 original size:21 final size:21
Alignment explanation
Indices: 2287--2367 Score: 92
Period size: 21 Copynumber: 3.6 Consensus size: 21
2277 CTACAAGTCC
2287 CCACCACCACCAGTCCACTCT
1 CCACCACCACCAGTCCACTCT
2308 CCACCACCACCA-TACTACTACAAATCT
1 CCACCACCACCAGT-C--C-AC---TCT
2335 CCACCACCACCAGTCCACTCT
1 CCACCACCACCAGTCCACTCT
2356 CCACCACCACCA
1 CCACCACCACCA
2368 TACTATTACA
Statistics
Matches: 52, Mismatches: 0, Indels: 16
0.76 0.00 0.24
Matches are distributed among these distances:
20 1 0.02
21 28 0.54
23 1 0.02
24 4 0.08
25 1 0.02
27 16 0.31
28 1 0.02
ACGTcount: A:0.30, C:0.54, G:0.02, T:0.14
Consensus pattern (21 bp):
CCACCACCACCAGTCCACTCT
Found at i:2404 original size:21 final size:21
Alignment explanation
Indices: 2287--2415 Score: 78
Period size: 21 Copynumber: 5.6 Consensus size: 21
2277 CTACAAGTCC
* * *
2287 CCACCACCACCAGTCCACTCT
1 CCACCACCACCAATTCAATCT
2308 CCACCACCACCATACTACTACAAATCT
1 CCACCACCACCA-A-T--T-C-AATCT
* * *
2335 CCACCACCACCAGTCCACTCT
1 CCACCACCACCAATTCAATCT
2356 CCACCACCACCATACTATTACAAATCT
1 CCACCACCACC--A--ATT-C-AATCT
*
2383 CCACCACCACCAATTCATTCT
1 CCACCACCACCAATTCAATCT
*
2404 CCTCCACCACCA
1 CCACCACCACCA
2416 TACTACTACA
Statistics
Matches: 85, Mismatches: 11, Indels: 24
0.71 0.09 0.20
Matches are distributed among these distances:
21 42 0.49
22 2 0.02
23 5 0.06
25 3 0.04
26 2 0.02
27 31 0.36
ACGTcount: A:0.30, C:0.50, G:0.02, T:0.18
Consensus pattern (21 bp):
CCACCACCACCAATTCAATCT
Found at i:2426 original size:144 final size:144
Alignment explanation
Indices: 1868--2799 Score: 590
Period size: 144 Copynumber: 6.4 Consensus size: 144
1858 TACAAGTCAC
* * *
1868 CACCACCTCCACCATACTACTACAAATCTCCACCCCCACCAGTCCACTCTCCACC-CCAACCATA
1 CACCACCACCACCATACTACTACAAATCCCCACCACCACCAGTCCACTCTCCACCACC-ACCATA
* * * ** * * * * * *
1932 TTATTACAAGTCTCCACCACCACC-TTCTCCTTCACCACCTCCACCATATTATTACAAGTCTCCA
65 CTATTACAAATCTCCACCACCACCAGT-TCAGTCTCCACCACCACCATACTACTACAAATCCCCA
* *
1996 CCACCACCTTCTC-CTT
129 CCACCACCATC-CACAT
* * * * * * *
2012 CACCACCTCCACCATACTACTACAAATCACCTCCACCTCC--TTCACCATCTCCTCCACCGCCAT
1 CACCACCACCACCATACTACTACAAATCCCCACCACCACCAGTCCA-C-TCTCCACCACCACCAT
* * * * ** * * ** * * *
2075 ACTACTACCAATCACCACCACCTCCAGTGAAGGCCCCTGCACCAACC-TACCATTACAACTCCCC
64 ACTATTACAAATCTCCACCACCACCAGTTCAGTCTCCACCACC-ACCATACTACTACAAATCCCC
* *
2139 TCCTCCACCAT-CATCAT
128 ACCACCACCATCCA-CAT
* ** * * * * *
2156 CTCTTCCTCCTCCTTACTACTACAAATCCCCACCACCTCCATCTCCA-TCTCCATTACCACCACC
1 CACCACCACCACCATACTACTACAAATCCCCACCACCACCA-GTCCACTCTCC---ACCACCA-C
* * * * * *
2220 TTCATACTATTACAAATCCCCTCCTCCACC-GTCGCCA-TCTCCACCTCCACCTTACTACTACAA
61 --CATACTATTACAAATCTCCACCACCACCAGT--TCAGTCTCCACCACCACCATACTACTACAA
*
2283 GTCCCCACCACCACCAGTCCAC-T
122 ATCCCCACCACCACCA-TCCACAT
* *
2306 CTCCACCACCACCATACTACTACAAATCTCCACCACCACCAGTCCACTCTCCACCACCACCATAC
1 CACCACCACCACCATACTACTACAAATCCCCACCACCACCAGTCCACTCTCCACCACCACCATAC
* * * *
2371 TATTACAAATCTCCACCACCACCAATTCATTCTCCTCCACCACCATACTACTACAAATCACCACC
66 TATTACAAATCTCCACCACCACCAGTTCAGTCTCCACCACCACCATACTACTACAAATCCCCACC
* * *
2436 TCCTCCTTCTC-CAT
131 ACCACCATC-CACAT
* * * * * * * *
2450 CTCCCCCACCACCATACTATTACAAGTCCCCACCACCACCAGTCTATTCCCCTCCACCACCATAC
1 CACCACCACCACCATACTACTACAAATCCCCACCACCACCAGTCCACTCTCCACCACCACCATAC
* * ** * * * * * *
2515 TATTACAAATCACCACCACCTCCAGTGAAGGT-TCCAGCACCAGCTTACCACTACAACTCCCCTC
66 TATTACAAATCTCCACCACCACCAGTTCA-GTCTCCACCACCACCATACTACTACAAATCCCCAC
*
2579 CTCCACCAT-CACCAT
130 CACCACCATCCA-CAT
* * * * *
2594 CACCACCGCCACCATACTACTACAAATCCCCACCTCCTCCAAGTCCA-TCGCCACCACTACCATA
1 CACCACCACCACCATACTACTACAAATCCCCACCACCACC-AGTCCACTCTCCACCACCACCATA
* * * * * * * * * *
2658 CTACTACAAATCTCCTCCTCCCCCA--TCACCATCTCCTCCTCCTCCCTACTACTACAAATCTCC
65 CTATTACAAATCTCCACCACCACCAGTTCA--GTCTCCACCACCACCATACTACTACAAATCCCC
*
2721 ACCACCTCCATCTC-CAT
128 ACCACCACCATC-CACAT
* * *
2738 CACCACCACCACCATACTACTACAAATCTCCACCTCCCCCA-T-CACCTTCTCCACCACCACCA
1 CACCACCACCACCATACTACTACAAATCCCCACCACCACCAGTCCA-C-TCTCCACCACCACCA
2800 GTCCACTCTC
Statistics
Matches: 610, Mismatches: 141, Indels: 74
0.74 0.17 0.09
Matches are distributed among these distances:
141 2 0.00
142 7 0.01
143 8 0.01
144 458 0.75
145 13 0.02
146 2 0.00
147 15 0.02
148 1 0.00
149 9 0.01
150 90 0.15
151 3 0.00
152 2 0.00
ACGTcount: A:0.27, C:0.49, G:0.03, T:0.21
Consensus pattern (144 bp):
CACCACCACCACCATACTACTACAAATCCCCACCACCACCAGTCCACTCTCCACCACCACCATAC
TATTACAAATCTCCACCACCACCAGTTCAGTCTCCACCACCACCATACTACTACAAATCCCCACC
ACCACCATCCACAT
Found at i:2774 original size:96 final size:97
Alignment explanation
Indices: 1870--2799 Score: 597
Period size: 96 Copynumber: 9.6 Consensus size: 97
1860 CAAGTCACCA
* * *
1870 CCACCTCCACCATACTACTACAAATCTCCACCCCCACCAGT--CCACTCTCCACC-CCAACCATA
1 CCACCACCACCATACTACTACAAATCTCCACCACCACCAGTCACCA-TCTCCTCCACC-ACCATA
* * * * * * * *
1932 TTATTACAAGTCTCCACCACCACCTTCTCCTTCA
64 CTACTACAAATCACCACCACCTCCATCTCCATCT
* * * * * * * * * *
1966 CCACCTCCACCATATTATTACAAGTCTCCACCACCACC-TTCTCCTTCACCACCTCCACCATACT
1 CCACCACCACCATACTACTACAAATCTCCACCACCACCAGTCACCATCTCCTCCACCACCATACT
* * *
2030 ACTACAAATCACCTCCACCTCCTTCACCATCT
66 ACTACAAATCACCACCACCTCCATCTCCATCT
* * * * * * * * *
2062 CCTCCACCGCCATACTACTACCAATCACCACCACCTCCAGTGA--AGGCCCCTGCACCAACC-TA
1 CCACCACCACCATACTACTACAAATCTCCACCACCACCAGTCACCA-TCTCCTCCACC-ACCATA
* * * * * * *
2124 CCATTACAACTCCCCTCCTCCACCATCAT-CATCT
64 CTACTACAAATCACCACCACCTCCATC-TCCATCT
** * * * * * *
2158 CTTCCTCCTCCTTACTACTACAAATCCCCACCACCTCCA-TCTCCATCTCCATTACCACCACCTT
1 CCACCACCACCATACTACTACAAATCTCCACCACCACCAGTCACCATCTCC--T-CCACCA-C--
* * * * * * *
2222 CATACTATTACAAATCCCCTCCTCCACCGTCGCCATCT
60 CATACTACTACAAATCACCACCACCTCCATCTCCATCT
* * * * *
2260 CCACCTCCACCTTACTACTACAAGTCCCCACCACCACCAGT--CCACTCTCCACCACCACCATAC
1 CCACCACCACCATACTACTACAAATCTCCACCACCACCAGTCACCA-TCTCCTCCACCACCATAC
* * *
2323 TACTACAAATCTCCACCACCACCA-GTCCACTCT
65 TACTACAAATCACCACCACCTCCATCTCCA-TCT
* * *
2356 CCACCACCACCATACTATTACAAATCTCCACCACCACCAATTCA--TTCTCCTCCACCACCATAC
1 CCACCACCACCATACTACTACAAATCTCCACCACCACC-AGTCACCATCTCCTCCACCACCATAC
* *
2419 TACTACAAATCACCACCTCCTCCTTCTCCATCT
65 TACTACAAATCACCACCACCTCCATCTCCATCT
* * * * * *
2452 CCCCCACCACCATACTATTACAAGTCCCCACCACCACCAGTCTA--TTCCCCTCCACCACCATAC
1 CCACCACCACCATACTACTACAAATCTCCACCACCACCAGTC-ACCATCTCCTCCACCACCATAC
* * **
2515 TATTACAAATCACCACCACCTCCA-GTGAAGGT-T
65 TACTACAAATCACCACCACCTCCATCTCCA--TCT
* * * * * * * * * * *
2548 CCAGCACCAGCTTACCACTACAACTCCCCTCCTCCACCA-TCACCATCACCACCGCCACCATACT
1 CCACCACCACCATACTACTACAAATCTCCACCACCACCAGTCACCATCTCCTCCACCACCATACT
* * ** *
2612 ACTACAAATCCCCACCTCCTCCAAGTCCATCG
66 ACTACAAATCACCACCACCTCCATCTCCATCT
* * * * * * *
2644 CCACCACTACCATACTACTACAAATCTCCTCCTCCCCCA-TCACCATCTCCTCCTCCTCCCTACT
1 CCACCACCACCATACTACTACAAATCTCCACCACCACCAGTCACCATCTCCTCCACCACCATACT
* *
2708 ACTACAAATCTCCACCACCTCCATCTCCATCA
66 ACTACAAATCACCACCACCTCCATCTCCATCT
* * * *
2740 CCACCACCACCATACTACTACAAATCTCCACCTCCCCCA-TCACCTTCTCCACCACCACCA
1 CCACCACCACCATACTACTACAAATCTCCACCACCACCAGTCACCATCTCCTCCACCACCA
2800 GTCCACTCTC
Statistics
Matches: 665, Mismatches: 138, Indels: 62
0.77 0.16 0.07
Matches are distributed among these distances:
94 1 0.00
95 13 0.02
96 543 0.82
97 19 0.03
98 3 0.00
99 11 0.02
101 4 0.01
102 70 0.11
103 1 0.00
ACGTcount: A:0.27, C:0.49, G:0.03, T:0.21
Consensus pattern (97 bp):
CCACCACCACCATACTACTACAAATCTCCACCACCACCAGTCACCATCTCCTCCACCACCATACT
ACTACAAATCACCACCACCTCCATCTCCATCT
Found at i:2831 original size:69 final size:69
Alignment explanation
Indices: 2716--2849 Score: 180
Period size: 69 Copynumber: 1.9 Consensus size: 69
2706 CTACTACAAA
* *
2716 TCTCCACCACCTCCATCTCCATCACCACCACCACCATACTACTACAAATCTCCACCTCCCCCATC
1 TCTCCACCACCACCATCTCCATCACCACCACCACCATACTACTACAAATCCCCACCTCCCCCATC
2781 ACCT
66 ACCT
* * * * * *
2785 TCTCCACCACCACCA-GTCCACTCTCCACCACCACCCTACTATTACAAGTCCCCACCTCCTCCAT
1 TCTCCACCACCACCATCTCCA-TCACCACCACCACCATACTACTACAAATCCCCACCTCCCCCAT
2849 C
65 C
2850 CTCTTCACCC
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
68 4 0.07
69 52 0.93
ACGTcount: A:0.25, C:0.54, G:0.01, T:0.20
Consensus pattern (69 bp):
TCTCCACCACCACCATCTCCATCACCACCACCACCATACTACTACAAATCCCCACCTCCCCCATC
ACCT
Done.