Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g02202.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2147
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34


Found at i:1674 original size:31 final size:31

Alignment explanation


    Indices: 1630--1713  Score: 91
    Period size: 31  Copynumber: 2.7  Consensus size: 31

       1620 TATGAAAATA

                   *               *       *
       1630 ATGTGTACAATTGA-CTCAAAATTAAAGTTTT
          1 ATGTGTATAATTGAGC-CAAAATCAAAGTTTC

                    *                      
       1661 ATGTGTATGATTGAGCCAAAATCAAAGTTTC
          1 ATGTGTATAATTGAGCCAAAATCAAAGTTTC

                     *   *         
       1692 ATGTGTATAGTTGTG-CAAAATC
          1 ATGTGTATAATTGAGCCAAAATC

       1714 GCAACACGTT


Statistics
Matches: 45,  Mismatches: 7, Indels: 3
        0.82            0.13        0.05

Matches are distributed among these distances:
  30    7  0.16
  31   37  0.82
  32    1  0.02

ACGTcount: A:0.36, C:0.11, G:0.18, T:0.36


Consensus pattern (31 bp):   
ATGTGTATAATTGAGCCAAAATCAAAGTTTC
Done.