Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g02243.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1880
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.34


Found at i:554 original size:18 final size:18

Alignment explanation


    Indices: 531--568  Score: 76
    Period size: 18  Copynumber: 2.1  Consensus size: 18

        521 CATATGAATG

                              
        531 CTATATGTATTGGTTGGT
          1 CTATATGTATTGGTTGGT

                              
        549 CTATATGTATTGGTTGGT
          1 CTATATGTATTGGTTGGT

              
        567 CT
          1 CT

        569 TGTCTTGCAG


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   20  1.00

ACGTcount: A:0.16, C:0.08, G:0.26, T:0.50


Consensus pattern (18 bp):   
CTATATGTATTGGTTGGT
Done.