Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g02311.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3363
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.30


Found at i:909 original size:19 final size:19

Alignment explanation


    Indices: 885--923  Score: 78
    Period size: 19  Copynumber: 2.1  Consensus size: 19

        875 CCAAGTCCAA

                               
        885 AAACACATTGCTTGAAAAT
          1 AAACACATTGCTTGAAAAT

                               
        904 AAACACATTGCTTGAAAAT
          1 AAACACATTGCTTGAAAAT

             
        923 A
          1 A

        924 CTGATCCAAT


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   20  1.00

ACGTcount: A:0.49, C:0.15, G:0.10, T:0.26


Consensus pattern (19 bp):   
AAACACATTGCTTGAAAAT
Done.