Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g02252.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 768

Length: 1280
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.34


Found at i:944 original size:12 final size:12

Alignment explanation


    Indices: 927--951  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

        917 CTAACAGCCC

                        
        927 CAGTATTAGGAG
          1 CAGTATTAGGAG

                        
        939 CAGTATTAGGAG
          1 CAGTATTAGGAG

             
        951 C
          1 C

        952 CCTGATGTAT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.32, C:0.12, G:0.32, T:0.24


Consensus pattern (12 bp):   
CAGTATTAGGAG
Done.