Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g02276.C2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4465
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28


Found at i:919 original size:3 final size:3

Alignment explanation


    Indices: 911--950  Score: 80
    Period size: 3  Copynumber: 13.3  Consensus size: 3

        901 GCCTTTCTTG

                                                                 
        911 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
          1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A

        951 AAATGATTTG


Statistics
Matches: 37,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   37  1.00

ACGTcount: A:0.68, C:0.00, G:0.33, T:0.00


Consensus pattern (3 bp):   
AGA

Done.