Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g02278.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1897
ACGTcount: A:0.28, C:0.15, G:0.22, T:0.35


Found at i:1849 original size:28 final size:28

Alignment explanation


    Indices: 1809--1868  Score: 120
    Period size: 28  Copynumber: 2.1  Consensus size: 28

       1799 AAAAATCTTA

                                        
       1809 TATTGGTCTTATACTAAGAGTTAGATTG
          1 TATTGGTCTTATACTAAGAGTTAGATTG

                                        
       1837 TATTGGTCTTATACTAAGAGTTAGATTG
          1 TATTGGTCTTATACTAAGAGTTAGATTG

                
       1865 TATT
          1 TATT

       1869 TTGTCCTCTC


Statistics
Matches: 32,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  28   32  1.00

ACGTcount: A:0.28, C:0.07, G:0.20, T:0.45


Consensus pattern (28 bp):   
TATTGGTCTTATACTAAGAGTTAGATTG
Done.