Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g02288.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4841
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.32


Found at i:71 original size:15 final size:15

Alignment explanation


    Indices: 53--83  Score: 62
    Period size: 15  Copynumber: 2.1  Consensus size: 15

         43 ATAACTAAAG

                           
         53 AAAAAATAGATAGAT
          1 AAAAAATAGATAGAT

                           
         68 AAAAAATAGATAGAT
          1 AAAAAATAGATAGAT

             
         83 A
          1 A

         84 GATGAGAGAT


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.68, C:0.00, G:0.13, T:0.19


Consensus pattern (15 bp):   
AAAAAATAGATAGAT
Done.