Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g02289.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 870

Length: 1450
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.33


Found at i:32 original size:15 final size:17

Alignment explanation


    Indices: 3--61  Score: 54
    Period size: 17  Copynumber: 3.6  Consensus size: 17

          1 AT

                             
          3 TATTTAGTTATTATTTA
          1 TATTTAGTTATTATTTA

                             
         20 TATTTAG-TA-TATTTA
          1 TATTTAGTTATTATTTA

                   *   *      
         35 T-TATTATTTAATATTTA
          1 TAT-TTAGTTATTATTTA

                       
         52 -ATTTAAGTTA
          1 TATTT-AGTTA

         62 AATAGAAAAA


Statistics
Matches: 35,  Mismatches: 2, Indels: 10
        0.74            0.04        0.21

Matches are distributed among these distances:
  14    1  0.03
  15   10  0.29
  16    6  0.17
  17   18  0.51

ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61


Consensus pattern (17 bp):   
TATTTAGTTATTATTTA

Found at i:82 original size:31 final size:33

Alignment explanation


    Indices: 42--115  Score: 100
    Period size: 31  Copynumber: 2.3  Consensus size: 33

         32 TTATTATTAT

                                      *      
         42 TTAAT-ATTTAATTTAAGT-TAAATAGAA-AAA
          1 TTAATAATTTAATTTAAGTATAAATAAAATAAA

                                   *         
         72 TTAATAATTTAATTTAAGTATAATTAAAATAAA
          1 TTAATAATTTAATTTAAGTATAAATAAAATAAA

               *       
        105 TTATTAATTTA
          1 TTAATAATTTA

        116 TTTTCATTTT


Statistics
Matches: 38,  Mismatches: 3, Indels: 3
        0.86            0.07        0.07

Matches are distributed among these distances:
  30    5  0.13
  31   13  0.34
  32    7  0.18
  33   13  0.34

ACGTcount: A:0.51, C:0.00, G:0.04, T:0.45


Consensus pattern (33 bp):   
TTAATAATTTAATTTAAGTATAAATAAAATAAA
Done.